build: re-run configure on node_version.h change

Fixes: https://github.com/nodejs/node/issues/29509

PR-URL: https://github.com/nodejs/node/pull/29510


Reviewed-By: Gus Caplan <me@gus.host>
Reviewed-By: Colin Ihrig <cjihrig@gmail.com>
Reviewed-By: Richard Lau <riclau@uk.ibm.com>
Reviewed-By: Ben Noordhuis <info@bnoordhuis.nl>
Reviewed-By: David Carlier <devnexen@gmail.com>
Reviewed-By: Jiawen Geng <technicalcute@gmail.com>
Reviewed-By: Luigi Pinca <luigipinca@gmail.com>
Reviewed-By: James M Snell <jasnell@gmail.com>
Reviewed-By: Michael Dawson <michael_dawson@ca.ibm.com>