Improve anno logging (bp #1639) (#1642)

* DRY out transform running and annotation remapping

(cherry picked from commit 1930b7b0)

* Do not throw NonFatal exceptions in annotation logging

If an annotation cannot be serialized by json4s, we should not throw
exceptions when doing trace-level logging.

(cherry picked from commit db7928a4

)

* Waive UpdateAnnotations.propagateAnnotations in Mima checks

This method was package private, public from the Java perspective but
private for Scala

Co-authored-by: Jack Koenig <koenig@sifive.com>