Dedup PassTests, add NoCircuitDedupAnnotations (#1302)

Change PassTests to include Dedup when running transforms. This makes
PassTests behave more like an actual compiler.

Fixes bugs in Inline, Flatten, and Grouping tests where the tests
would only work without deduplication. This adds
NoCircuiDedupAnnotations to prevent deduplication for the offending
tests.

Signed-off-by: Schuyler Eldridge <schuyler.eldridge@ibm.com>