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authorDylan Baker <dylan@pnwbakers.com>2020-09-29 14:55:38 -0700
committerGitHub <noreply@github.com>2020-09-29 14:55:38 -0700
commit137c3124e23f0f589c8855aafcd7897aa6d8c544 (patch)
treeeadd5f53f37aa92f91506e2b6f2e253080d0fa66 /mesonbuild
parent400ec2d6857ba72147a3d9389777ec64e12fe67e (diff)
parentbffd981246792e97c0a28fb53da49ff601873e76 (diff)
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Merge pull request #7758 from dcbaker/submit/hdf5-factory
dependencies/hdf5: Convert to a dependency_factory
Diffstat (limited to 'mesonbuild')
-rw-r--r--mesonbuild/coredata.py2
-rw-r--r--mesonbuild/dependencies/__init__.py4
-rw-r--r--mesonbuild/dependencies/base.py6
-rw-r--r--mesonbuild/dependencies/hdf5.py251
4 files changed, 152 insertions, 111 deletions
diff --git a/mesonbuild/coredata.py b/mesonbuild/coredata.py
index 5827a4e..a6cfd5b 100644
--- a/mesonbuild/coredata.py
+++ b/mesonbuild/coredata.py
@@ -390,7 +390,7 @@ class CoreData:
) # type: PerMachine[T.defaultdict[str, OptionDictType]]
self.base_options = {} # type: OptionDictType
self.cross_files = self.__load_config_files(options, scratch_dir, 'cross')
- self.compilers = PerMachine(OrderedDict(), OrderedDict())
+ self.compilers = PerMachine(OrderedDict(), OrderedDict()) # type: PerMachine[T.Dict[str, Compiler]]
build_cache = DependencyCache(self.builtins_per_machine, MachineChoice.BUILD)
host_cache = DependencyCache(self.builtins_per_machine, MachineChoice.BUILD)
diff --git a/mesonbuild/dependencies/__init__.py b/mesonbuild/dependencies/__init__.py
index d75d226..7110c1f 100644
--- a/mesonbuild/dependencies/__init__.py
+++ b/mesonbuild/dependencies/__init__.py
@@ -14,7 +14,7 @@
from .boost import BoostDependency
from .cuda import CudaDependency
-from .hdf5 import HDF5Dependency
+from .hdf5 import hdf5_factory
from .base import ( # noqa: F401
Dependency, DependencyException, DependencyMethods, ExternalProgram, EmptyExternalProgram, NonExistingExternalProgram,
ExternalDependency, NotFoundDependency, ExternalLibrary, ExtraFrameworkDependency, InternalDependency,
@@ -51,7 +51,7 @@ packages.update({
# per-file
'coarray': coarray_factory,
- 'hdf5': HDF5Dependency,
+ 'hdf5': hdf5_factory,
'mpi': mpi_factory,
'scalapack': scalapack_factory,
diff --git a/mesonbuild/dependencies/base.py b/mesonbuild/dependencies/base.py
index 99030e8..7b2f2d9 100644
--- a/mesonbuild/dependencies/base.py
+++ b/mesonbuild/dependencies/base.py
@@ -207,7 +207,7 @@ class Dependency:
"""
raise RuntimeError('Unreachable code in partial_dependency called')
- def _add_sub_dependency(self, deplist: T.List['DependencyType']) -> bool:
+ def _add_sub_dependency(self, deplist: T.Iterable[T.Callable[[], 'Dependency']]) -> bool:
"""Add an internal depdency from a list of possible dependencies.
This method is intended to make it easier to add additional
@@ -302,10 +302,10 @@ class InternalDependency(Dependency):
return new_dep
class HasNativeKwarg:
- def __init__(self, kwargs):
+ def __init__(self, kwargs: T.Dict[str, T.Any]):
self.for_machine = self.get_for_machine_from_kwargs(kwargs)
- def get_for_machine_from_kwargs(self, kwargs):
+ def get_for_machine_from_kwargs(self, kwargs: T.Dict[str, T.Any]) -> MachineChoice:
return MachineChoice.BUILD if kwargs.get('native', False) else MachineChoice.HOST
class ExternalDependency(Dependency, HasNativeKwarg):
diff --git a/mesonbuild/dependencies/hdf5.py b/mesonbuild/dependencies/hdf5.py
index 6280010..21f4e71 100644
--- a/mesonbuild/dependencies/hdf5.py
+++ b/mesonbuild/dependencies/hdf5.py
@@ -14,122 +14,163 @@
# This file contains the detection logic for miscellaneous external dependencies.
-import subprocess
+import functools
+import os
+import re
import shutil
+import subprocess
from pathlib import Path
-from .. import mlog
-from ..mesonlib import split_args, listify
-from .base import (DependencyException, DependencyMethods, ExternalDependency, ExternalProgram,
- PkgConfigDependency)
+from ..mesonlib import OrderedSet, join_args
+from .base import (
+ DependencyException, DependencyMethods, ConfigToolDependency,
+ PkgConfigDependency, factory_methods
+)
import typing as T
if T.TYPE_CHECKING:
+ from .base import Dependency
+ from ..envconfig import MachineChoice
from ..environment import Environment
-class HDF5Dependency(ExternalDependency):
- def __init__(self, environment: 'Environment', kwargs: T.Dict[str, T.Any]) -> None:
- language = kwargs.get('language', 'c')
- super().__init__('hdf5', environment, kwargs, language=language)
- kwargs['required'] = False
- kwargs['silent'] = True
- self.is_found = False
- methods = listify(self.methods)
+class HDF5PkgConfigDependency(PkgConfigDependency):
+
+ """Handle brokenness in the HDF5 pkg-config files."""
+
+ def __init__(self, name: str, environment: 'Environment', kwargs: T.Dict[str, T.Any], language: T.Optional[str] = None) -> None:
+ language = language or 'c'
+ if language not in {'c', 'cpp', 'fortran'}:
+ raise DependencyException('Language {} is not supported with HDF5.'.format(language))
+
+ super().__init__(name, environment, kwargs, language)
+ if not self.is_found:
+ return
- if language not in ('c', 'cpp', 'fortran'):
+ # some broken pkgconfig don't actually list the full path to the needed includes
+ newinc = [] # type: T.List[str]
+ for arg in self.compile_args:
+ if arg.startswith('-I'):
+ stem = 'static' if kwargs.get('static', False) else 'shared'
+ if (Path(arg[2:]) / stem).is_dir():
+ newinc.append('-I' + str(Path(arg[2:]) / stem))
+ self.compile_args += newinc
+
+ link_args = [] # type: T.List[str]
+ for larg in self.get_link_args():
+ lpath = Path(larg)
+ # some pkg-config hdf5.pc (e.g. Ubuntu) don't include the commonly-used HL HDF5 libraries,
+ # so let's add them if they exist
+ # additionally, some pkgconfig HDF5 HL files are malformed so let's be sure to find HL anyway
+ if lpath.is_file():
+ hl = []
+ if language == 'cpp':
+ hl += ['_hl_cpp', '_cpp']
+ elif language == 'fortran':
+ hl += ['_hl_fortran', 'hl_fortran', '_fortran']
+ hl += ['_hl'] # C HL library, always needed
+
+ suffix = '.' + lpath.name.split('.', 1)[1] # in case of .dll.a
+ for h in hl:
+ hlfn = lpath.parent / (lpath.name.split('.', 1)[0] + h + suffix)
+ if hlfn.is_file():
+ link_args.append(str(hlfn))
+ # HDF5 C libs are required by other HDF5 languages
+ link_args.append(larg)
+ else:
+ link_args.append(larg)
+
+ self.link_args = link_args
+
+
+class HDF5ConfigToolDependency(ConfigToolDependency):
+
+ """Wrapper around hdf5 binary config tools."""
+
+ version_arg = '-showconfig'
+
+ def __init__(self, name: str, environment: 'Environment', kwargs: T.Dict[str, T.Any], language: T.Optional[str] = None) -> None:
+ language = language or 'c'
+ if language not in {'c', 'cpp', 'fortran'}:
raise DependencyException('Language {} is not supported with HDF5.'.format(language))
- if set([DependencyMethods.AUTO, DependencyMethods.PKGCONFIG]).intersection(methods):
- pkgconfig_files = ['hdf5', 'hdf5-serial']
- PCEXE = shutil.which('pkg-config')
- if PCEXE:
- # some distros put hdf5-1.2.3.pc with version number in .pc filename.
- ret = subprocess.run([PCEXE, '--list-all'], stdout=subprocess.PIPE, stderr=subprocess.DEVNULL,
- universal_newlines=True)
- if ret.returncode == 0:
- for pkg in ret.stdout.split('\n'):
- if pkg.startswith(('hdf5')):
- pkgconfig_files.append(pkg.split(' ', 1)[0])
- pkgconfig_files = list(set(pkgconfig_files)) # dedupe
-
- for pkg in pkgconfig_files:
- pkgdep = PkgConfigDependency(pkg, environment, kwargs, language=self.language)
- if not pkgdep.found():
- continue
-
- self.compile_args = pkgdep.get_compile_args()
- # some broken pkgconfig don't actually list the full path to the needed includes
- newinc = []
- for arg in self.compile_args:
- if arg.startswith('-I'):
- stem = 'static' if kwargs.get('static', False) else 'shared'
- if (Path(arg[2:]) / stem).is_dir():
- newinc.append('-I' + str(Path(arg[2:]) / stem))
- self.compile_args += newinc
-
- # derive needed libraries by language
- pd_link_args = pkgdep.get_link_args()
- link_args = []
- for larg in pd_link_args:
- lpath = Path(larg)
- # some pkg-config hdf5.pc (e.g. Ubuntu) don't include the commonly-used HL HDF5 libraries,
- # so let's add them if they exist
- # additionally, some pkgconfig HDF5 HL files are malformed so let's be sure to find HL anyway
- if lpath.is_file():
- hl = []
- if language == 'cpp':
- hl += ['_hl_cpp', '_cpp']
- elif language == 'fortran':
- hl += ['_hl_fortran', 'hl_fortran', '_fortran']
- hl += ['_hl'] # C HL library, always needed
-
- suffix = '.' + lpath.name.split('.', 1)[1] # in case of .dll.a
- for h in hl:
- hlfn = lpath.parent / (lpath.name.split('.', 1)[0] + h + suffix)
- if hlfn.is_file():
- link_args.append(str(hlfn))
- # HDF5 C libs are required by other HDF5 languages
- link_args.append(larg)
- else:
- link_args.append(larg)
-
- self.link_args = link_args
- self.version = pkgdep.get_version()
- self.is_found = True
- self.pcdep = pkgdep
- return
-
- if DependencyMethods.AUTO in methods:
- wrappers = {'c': 'h5cc', 'cpp': 'h5c++', 'fortran': 'h5fc'}
- comp_args = []
- link_args = []
- # have to always do C as well as desired language
- for lang in set([language, 'c']):
- prog = ExternalProgram(wrappers[lang], silent=True)
- if not prog.found():
- return
- shlib_arg = '-noshlib' if kwargs.get('static', False) else '-shlib'
- cmd = prog.get_command() + [shlib_arg, '-show']
- p = subprocess.run(cmd, stdout=subprocess.PIPE, stderr=subprocess.PIPE, universal_newlines=True, timeout=15)
- if p.returncode != 0:
- mlog.debug('Command', mlog.bold(str(cmd)), 'failed to run:')
- mlog.debug(mlog.bold('Standard output\n'), p.stdout)
- mlog.debug(mlog.bold('Standard error\n'), p.stderr)
- return
- args = split_args(p.stdout)
- for arg in args[1:]:
- if arg.startswith(('-I', '-f', '-D')) or arg == '-pthread':
- comp_args.append(arg)
- elif arg.startswith(('-L', '-l', '-Wl')):
- link_args.append(arg)
- elif Path(arg).is_file():
- link_args.append(arg)
- self.compile_args = comp_args
- self.link_args = link_args
- self.is_found = True
+ if language == 'c':
+ cenv = 'CC'
+ tools = ['h5cc']
+ elif language == 'cpp':
+ cenv = 'CXX'
+ tools = ['h5c++']
+ elif language == 'fortran':
+ cenv = 'FC'
+ tools = ['h5fc']
+ else:
+ raise DependencyException('How did you get here?')
+
+ # We need this before we call super()
+ for_machine = self.get_for_machine_from_kwargs(kwargs)
+
+ nkwargs = kwargs.copy()
+ nkwargs['tools'] = tools
+
+ # Override the compiler that the config tools are going to use by
+ # setting the environment variables that they use for the compiler and
+ # linkers.
+ compiler = environment.coredata.compilers[for_machine][language]
+ try:
+ os.environ['HDF5_{}'.format(cenv)] = join_args(compiler.get_exelist())
+ os.environ['HDF5_{}LINKER'.format(cenv)] = join_args(compiler.get_linker_exelist())
+ super().__init__(name, environment, nkwargs, language)
+ finally:
+ del os.environ['HDF5_{}'.format(cenv)]
+ del os.environ['HDF5_{}LINKER'.format(cenv)]
+ if not self.is_found:
return
- @staticmethod
- def get_methods() -> T.List[DependencyMethods]:
- return [DependencyMethods.AUTO, DependencyMethods.PKGCONFIG]
+ args = self.get_config_value(['-show', '-noshlib' if kwargs.get('static', False) else '-shlib'], 'args')
+ for arg in args[1:]:
+ if arg.startswith(('-I', '-f', '-D')) or arg == '-pthread':
+ self.compile_args.append(arg)
+ elif arg.startswith(('-L', '-l', '-Wl')):
+ self.link_args.append(arg)
+ elif Path(arg).is_file():
+ self.link_args.append(arg)
+
+ # If the language is not C we need to add C as a subdependency
+ if language != 'c':
+ nkwargs = kwargs.copy()
+ nkwargs['language'] = 'c'
+ # I'm being too clever for mypy and pylint
+ self.is_found = self._add_sub_dependency(hdf5_factory(environment, for_machine, nkwargs)) # type: ignore # pylint: disable=no-value-for-parameter
+
+ def _sanitize_version(self, ver: str) -> str:
+ v = re.search(r'\s*HDF5 Version: (\d+\.\d+\.\d+)', ver)
+ return v.group(1)
+
+
+@factory_methods({DependencyMethods.PKGCONFIG, DependencyMethods.CONFIG_TOOL})
+def hdf5_factory(env: 'Environment', for_machine: 'MachineChoice',
+ kwargs: T.Dict[str, T.Any], methods: T.List[DependencyMethods]) -> T.List[T.Callable[[], 'Dependency']]:
+ language = kwargs.get('language')
+ candidates = [] # type: T.List[T.Callable[[], Dependency]]
+
+ if DependencyMethods.PKGCONFIG in methods:
+ # Use an ordered set so that these remain the first tried pkg-config files
+ pkgconfig_files = OrderedSet(['hdf5', 'hdf5-serial'])
+ # FIXME: This won't honor pkg-config paths, and cross-native files
+ PCEXE = shutil.which('pkg-config')
+ if PCEXE:
+ # some distros put hdf5-1.2.3.pc with version number in .pc filename.
+ ret = subprocess.run([PCEXE, '--list-all'], stdout=subprocess.PIPE, stderr=subprocess.DEVNULL,
+ universal_newlines=True)
+ if ret.returncode == 0:
+ for pkg in ret.stdout.split('\n'):
+ if pkg.startswith(('hdf5')):
+ pkgconfig_files.add(pkg.split(' ', 1)[0])
+
+ for pkg in pkgconfig_files:
+ candidates.append(functools.partial(HDF5PkgConfigDependency, pkg, env, kwargs, language))
+
+ if DependencyMethods.CONFIG_TOOL in methods:
+ candidates.append(functools.partial(HDF5ConfigToolDependency, 'hdf5', env, kwargs, language))
+
+ return candidates