lib: replace Set.prototype with SetPrototype primordial

PR-URL: https://github.com/nodejs/node/pull/31161


Reviewed-By: Colin Ihrig <cjihrig@gmail.com>
Reviewed-By: Ruben Bridgewater <ruben@bridgewater.de>
Reviewed-By: Michaël Zasso <targos@protonmail.com>
Reviewed-By: James M Snell <jasnell@gmail.com>
Reviewed-By: Rich Trott <rtrott@gmail.com>
Reviewed-By: Trivikram Kamat <trivikr.dev@gmail.com>