test: use runWithInvalidFD() in tests expecting EBADF

PR-URL: https://github.com/nodejs/node/pull/18864
Fixes: https://github.com/nodejs/node/issues/18820


Reviewed-By: Ben Noordhuis <info@bnoordhuis.nl>
Reviewed-By: Colin Ihrig <cjihrig@gmail.com>
Reviewed-By: James M Snell <jasnell@gmail.com>
Reviewed-By: Ruben Bridgewater <ruben@bridgewater.de>