Revert "test: test configure ninja"

This reverts commit 85dd9e83.

`make test` should never change the current set of `configure`
flags.

Refs: https://github.com/nodejs/node/pull/30033

PR-URL: https://github.com/nodejs/node/pull/30295


Reviewed-By: Richard Lau <riclau@uk.ibm.com>
Reviewed-By: Jiawen Geng <technicalcute@gmail.com>