src: clean up agent loop when exiting through destructor

Fixes: https://github.com/nodejs/node/issues/22042

PR-URL: https://github.com/nodejs/node/pull/21867


Reviewed-By: James M Snell <jasnell@gmail.com>
Reviewed-By: Eugene Ostroukhov <eostroukhov@google.com>
Reviewed-By: Ali Ijaz Sheikh <ofrobots@google.com>