test: remove unnecessary `--pending-deprecation` flag

PR-URL: https://github.com/nodejs/node/pull/38819


Reviewed-By: Darshan Sen <raisinten@gmail.com>
Reviewed-By: James M Snell <jasnell@gmail.com>
Reviewed-By: Rich Trott <rtrott@gmail.com>
Reviewed-By: Luigi Pinca <luigipinca@gmail.com>