tools: fix markdown linting

This updates remark-preset-lint-node to 3.0.1, which actually works
unlike the 3.0.0 version we're using. (Sorry about 3.0.0 not actually
linting!)

It also updates rollup and the rollup config. So this uses the
latest everything as of this writing.

PR-URL: https://github.com/nodejs/node/pull/39832


Reviewed-By: Daijiro Wachi <daijiro.wachi@gmail.com>
Reviewed-By: Michaël Zasso <targos@protonmail.com>
Reviewed-By: Antoine du Hamel <duhamelantoine1995@gmail.com>