[flang] Ensure all warning/portability messages are guarded by Should… (#90518)

…Warn()

Many warning messages were being emitted unconditionally. Ensure that
all warnings are conditional on a true result from a call to
common::LanguageFeatureControl::ShouldWarn() so that it is easy for a
driver to disable them all, or, in the future, to provide per-warning
control over them.