WiringTransform Refactor (#648)

Massive refactoring to WiringTransform with the use of a new EulerTour 
class to speed things up via fast least common ancestor (LCA) queries.

Changes include (but are not limited to):

* Use lowest common ancestor when wiring
* Add EulerTour class with naive and Berkman-Vishkin RMQ
* Adds LCA method for Instance Graph
* Enables "Two Sources" using "Top" wiring test as this is now valid
* Remove TopAnnotation from WiringTransform
* Represent WiringTransform sink as `Seq[Named]`
* Remove WiringUtils.countInstances, fix imports
* Support sources under sinks in WiringTransform
* Enable internal module wiring
* Support Wiring of Aggregates
h/t @edcote
fixes #728 

Signed-off-by: Schuyler Eldridge <schuyler.eldridge@ibm.com>
Reviewed-by: Jack <Koenig&lt;jack.koenig3@gmail.com>