xcms

LC/MS and GC/MS Data Analysis

Framework for processing and visualization of chromatographically separated and single-spectra mass spectral data. Imports from AIA/ANDI NetCDF, mzXML, and mzData files. Preprocesses data for high-throughput, untargeted analyte profiling.

Author Colin A. Smith , Ralf Tautenhahn
Maintainer Colin A. Smith

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("xcms")

Documentation

Package Downloads

FlowChart.pdf
Grouping FTICR-MS data with xcms
Installation Instructions for xcms
Processing Tandem-MS and MS$^n$ data with with xcms
LC/MS Preprocessing and Analysis with xcms
Reference Manual
Package source xcms_1.14.1.tar.gz
Windows binary xcms_1.14.1.zip
MacOS X 10.4 (Tiger) binary xcms_1.14.1.tgz
MacOS X 10.5 (Leopard) binary xcms_1.14.1.tgz
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Details

biocViews
Depends
R , methods
Imports
Suggests
System Requirements NetCDF, zlib
License GPL version 2 or newer
URL http://metlin.scripps.edu/download/
Depends On Me
Imports Me
Suggests Me
Development History Bioconductor Changelog