ChemmineR

A Compound Data Mining Framework

ChemMineR is an open source compound mining framework. It contains functions for atom descriptor calculation, structure similarity searching, clustering of compound libraries and various utilities for managing complex compound data. It also offers a wide range of visualization functions for compound clusters and chemical structures. The package is integrated with the online ChemMine environment and allows bidirectional communications between the two services.

Author Y. Eddie Cao, Anna Charisi, Thomas Girke
Maintainer Y. Eddie Cao

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("ChemmineR")

Documentation

gpls Tutorial PDF R Script
overview.pdf PDF
scatterplot.pdf PDF
searchscreenshot.pdf PDF
visualizescreenshot.pdf PDF R Script
Reference Manual

Details

biocViews
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System Requirements
License GPL (>=2)
URL
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Development History Bioconductor Changelog

Package Downloads

Package source ChemmineR_1.4.0.tar.gz
Windows binary ChemmineR_1.4.0.zip
MacOS X 10.4 (Tiger) binary ChemmineR_1.4.0.tgz
MacOS X 10.5 (Leopard) binary ChemmineR_1.4.0.tgz
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