The package contains functions for exploratory oligonucleotide array analysis. The dependance to tkWidgets only concerns few convenience functions. 'affy' is fully functional without it.
| Author | Rafael A. Irizarry , Laurent Gautier , Benjamin Milo Bolstad , and Crispin Miller with contributions from Magnus Astrand , Leslie M. Cope , Robert Gentleman, Jeff Gentry, Conrad Halling , Wolfgang Huber, James MacDonald , Benjamin I. P. Rubinstein, Christopher Workman , John Zhang |
| Maintainer | Rafael A. Irizarry |
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("affy")
Vignettes (Documentation) |
Package Downloads |
|||||||||||
|
|
| biocViews | |
|---|---|
| Depends | R, Biobase, methods, utils, affyio, preprocessCore |
| Suggests | tkWidgets, affydata, geneplotter |
| Imports | |
| SystemRequirements | |
| License | LGPL version 2 or newer |
| URL | |
| dependsOnMe | AffyExpress, BeadExplorer, GeneTraffic, Harshlight, RefPlus, adSplit, affyPLM, affyQCReport, affycoretools, affylmGUI, affypdnn, altcdfenvs, beadarray, bgx, ecolitk, exonmap, factDesign, gcrma, lumi, maDB, makecdfenv, matchprobes, panp, plier, puma, rHVDM, simpleaffy, sscore, tilingArray, vsn, webbioc |
| suggestsMe | beadarraySNP, hexbin, limma, made4, oneChannelGUI, siggenes |