{"name":"bbtools","full_name":"bbtools","tap":"homebrew/core","oldnames":[],"aliases":[],"versioned_formulae":[],"desc":"Brian Bushnell's tools for manipulating reads","license":"BSD-3-Clause","homepage":"https://bbmap.org/","versions":{"stable":"39.88","head":null,"bottle":true},"urls":{"stable":{"url":"https://downloads.sourceforge.net/bbmap/BBMap_39.88.tar.gz","tag":null,"revision":null,"using":null,"checksum":"72b62d91b9b6e0aa157a26177c70690272f85b61e911c7c1f73e26c453c592f8"}},"patches":[],"revision":0,"version_scheme":0,"compatibility_version":null,"autobump":true,"no_autobump_message":null,"skip_livecheck":false,"bottle":{"stable":{"rebuild":0,"root_url":"https://ghcr.io/v2/homebrew/core","files":{"arm64_tahoe":{"cellar":":any","url":"https://ghcr.io/v2/homebrew/core/bbtools/blobs/sha256:42fb389488163cb64bb46bf4a506efb158541dc73cf493225675a8808130e759","sha256":"42fb389488163cb64bb46bf4a506efb158541dc73cf493225675a8808130e759"},"arm64_sequoia":{"cellar":":any","url":"https://ghcr.io/v2/homebrew/core/bbtools/blobs/sha256:2c11749ed1ee53d3fa7dac13aba842c5bd357626020f25411fd4b84ac6a27443","sha256":"2c11749ed1ee53d3fa7dac13aba842c5bd357626020f25411fd4b84ac6a27443"},"arm64_sonoma":{"cellar":":any","url":"https://ghcr.io/v2/homebrew/core/bbtools/blobs/sha256:bbd4c5a579728e6dc52e090ecfadffb8962f040fdff4bb6b25bbe41ed5edbb2e","sha256":"bbd4c5a579728e6dc52e090ecfadffb8962f040fdff4bb6b25bbe41ed5edbb2e"},"sonoma":{"cellar":":any","url":"https://ghcr.io/v2/homebrew/core/bbtools/blobs/sha256:883d07495c0aa8aa833a48861e1b57a16f6ba82f6872a13f3db1b688b527750c","sha256":"883d07495c0aa8aa833a48861e1b57a16f6ba82f6872a13f3db1b688b527750c"},"arm64_linux":{"cellar":":any_skip_relocation","url":"https://ghcr.io/v2/homebrew/core/bbtools/blobs/sha256:b2b098f7e83fb334236b6d39dd846d2846b4fc713ad17d86aa7671e3e0f39935","sha256":"b2b098f7e83fb334236b6d39dd846d2846b4fc713ad17d86aa7671e3e0f39935"},"x86_64_linux":{"cellar":":any_skip_relocation","url":"https://ghcr.io/v2/homebrew/core/bbtools/blobs/sha256:65ad0de88f1f546e8e85636d131bff71344d4bcc489eb0ca63b88e780ba3e909","sha256":"65ad0de88f1f546e8e85636d131bff71344d4bcc489eb0ca63b88e780ba3e909"}}}},"pour_bottle_only_if":null,"keg_only":false,"keg_only_reason":null,"options":[],"build_dependencies":[],"dependencies":["openjdk"],"test_dependencies":[],"recommended_dependencies":[],"optional_dependencies":[],"uses_from_macos":[],"uses_from_macos_bounds":[],"requirements":[],"conflicts_with":[],"conflicts_with_reasons":[],"link_overwrite":[],"caveats":null,"installed":[],"linked_keg":null,"pinned":false,"outdated":false,"deprecated":false,"deprecation_date":null,"deprecation_reason":null,"deprecation_replacement_formula":null,"deprecation_replacement_cask":null,"deprecate_args":null,"disabled":false,"disable_date":null,"disable_reason":null,"disable_replacement_formula":null,"disable_replacement_cask":null,"disable_args":null,"post_install_steps":[],"post_install_defined":false,"service":null,"tap_git_head":"2e84f2ff6500f17d1e5246bc35f5b83349fa0e7e","ruby_source_path":"Formula/b/bbtools.rb","ruby_source_checksum":{"sha256":"bca82e1f61c3b7c177133c4d4b5558c9d3fc7741f26f870ae69a188fe7f764d0"},"variations":{},"executables":["a_sample_mt.sh","addadapters.sh","addssu.sh","adjusthomopolymers.sh","alignrandom.sh","alltoall.sh","analyzeaccession.sh","analyzegenes.sh","analyzesketchresults.sh","applyvariants.sh","bamlinestreamer.sh","bandedaligner.sh","bandedplusaligner.sh","bbcms.sh","bbcountunique.sh","bbcrisprfinder.sh","bbduk.sh","bbdukOld.sh","bbdukS.sh","bbest.sh","bbfakereads.sh","bbmap.sh","bbmapskimmer.sh","bbmask.sh","bbmerge-auto.sh","bbmerge.sh","bbnorm.sh","bbrealign.sh","bbrename.sh","bbsketch.sh","bbsort.sh","bbsplit.sh","bbsplitpairs.sh","bbstats.sh","bbversion.sh","bbwrap.sh","bloomfilter.sh","bloomfilterparser.sh","calcmem.sh","calctruequality.sh","callgenes.sh","callpeaks.sh","callvariants.sh","callvariants2.sh","cat.sh","cbcl2text.sh","cg2illumina.sh","checkstrand.sh","cladeloader.sh","cladeserver.sh","cloudplot.sh","clumpify.sh","commonkmers.sh","comparegff.sh","comparelabels.sh","comparesketch.sh","comparessu.sh","comparevcf.sh","consect.sh","consensus.sh","copyfile.sh","countbarcodes.sh","countbarcodes2.sh","countduplicates.sh","countgc.sh","countsharedlines.sh","covmaker.sh","crossblock.sh","crosscontaminate.sh","crosscutaligner.sh","cutgff.sh","cutprimers.sh","ddlblacklist.sh","ddlcalibrate.sh","ddlcompare.sh","ddlmerger.sh","ddlwriter.sh","decontaminate.sh","dedupe.sh","dedupe2.sh","dedupebymapping.sh","demuxbyname.sh","demuxserver.sh","diskbench.sh","dlctieraccuracy.sh","driftingaligner.sh","driftingplusaligner.sh","estherfilter.sh","explodetree.sh","fastqscan.sh","fetchproks.sh","filescan.sh","filterassemblysummary.sh","filterbarcodes.sh","filterbycoverage.sh","filterbyname.sh","filterbysequence.sh","filterbytaxa.sh","filterbytile.sh","filterlines.sh","filtersam.sh","filtersilva.sh","filtersubs.sh","filtervcf.sh","findrepeats.sh","findssu.sh","fix_script_paths.sh","fixgaps.sh","fll2simulate.sh","fungalrelease.sh","fuse.sh","gbff2gff.sh","getreads.sh","gi2ancestors.sh","gi2taxid.sh","gitable.sh","glocalaligner.sh","gradebins.sh","grademerge.sh","gradesam.sh","icecreamfinder.sh","icecreamgrader.sh","icecreammaker.sh","idmatrix.sh","idtree.sh","indelfree.sh","invertkey.sh","javasetup.sh","kapastats.sh","kcompress.sh","keepbestcopy.sh","khist.sh","kmercountexact.sh","kmercountmulti.sh","kmercountshort.sh","kmercoverage.sh","kmerfilterset.sh","kmerlimit.sh","kmerlimit2.sh","kmerposition.sh","kmutate.sh","lilypad.sh","loadreads.sh","loglog.sh","lowcomplexcalibrate.sh","makechimeras.sh","makecontaminatedgenomes.sh","makepolymers.sh","makequickbinvector.sh","mantissacompare.sh","mapPacBio.sh","matrixtocolumns.sh","memdetect.sh","mergeOTUs.sh","mergebarcodes.sh","mergepgm.sh","mergeribo.sh","mergesam.sh","mergesketch.sh","mergesorted.sh","microalign.sh","msa.sh","mutate.sh","muxbyname.sh","netfilter.sh","novademux.sh","parallelogram.sh","partition.sh","phylip2fasta.sh","picksubset.sh","pileup.sh","pileup2.sh","plotflowcell.sh","plotgc.sh","plothist.sh","plotreadposition.sh","polyfilter.sh","postfilter.sh","printtime.sh","processfrag.sh","processhi-c.sh","processspeed.sh","profile.sh","quabblealigner.sh","quantumaligner.sh","quickbin.sh","quickclade.sh","randomgenome.sh","randomreads.sh","randomreadsmg.sh","readlength.sh","reassemble.sh","reducecolumns.sh","reducesilva.sh","reformat.sh","reformat2.sh","reformat3.sh","reformatpb.sh","removebadbarcodes.sh","removecatdogmousehuman.sh","removehuman.sh","removehuman2.sh","removemicrobes.sh","removesmartbell.sh","rename.sh","renamebymapping.sh","renamebysketch.sh","renameimg.sh","renameref.sh","repair.sh","replaceheaders.sh","representative.sh","rqcfilter.sh","rqcfilter2.sh","rqcfilter3.sh","runhmm.sh","samstreamer.sh","samtoroc.sh","scalarintervals.sh","scalars.sh","scoresequence.sh","scrabblealigner.sh","seal.sh","sendclade.sh","sendsketch.sh","seqtovec.sh","shred.sh","shrinkaccession.sh","shuffle.sh","shuffle2.sh","sketch.sh","sketchblacklist.sh","sketchblacklist2.sh","smithwaterman.sh","sortbyname.sh","splitbytaxa.sh","splitnextera.sh","splitribo.sh","splitsam.sh","splitsam4way.sh","splitsam6way.sh","ssuserver.sh","stats.sh","stats3.sh","statswrapper.sh","stream.sh","streamsam.sh","subsketch.sh","summarizecontam.sh","summarizecoverage.sh","summarizecrossblock.sh","summarizemerge.sh","summarizequast.sh","summarizescafstats.sh","summarizeseal.sh","summarizesketch.sh","synthmda.sh","tadpipe.sh","tadpole.sh","tadwrapper.sh","tagandmerge.sh","taxonomy.sh","taxserver.sh","taxsize.sh","taxtree.sh","testaligners.sh","testaligners2.sh","testalignersbatch.sh","testalignerslength.sh","testfilesystem.sh","testformat.sh","testformat2.sh","tetramerfreq.sh","textfile.sh","tiledump.sh","train.sh","trainLCHist.sh","translate6frames.sh","trimcontigs.sh","ttllsimulate.sh","unicode2ascii.sh","unzip.sh","vcf2gff.sh","visualizealignment.sh","wavefrontaligner.sh","wavefrontalignerviz.sh","webcheck.sh","wobblealigner.sh","wobbleplusaligner.sh","xdrophaligner.sh","zz_rename_package.sh"],"analytics":{"install":{"30d":{"bbtools":69,"bbtools --HEAD":1},"90d":{"bbtools":206,"bbtools --HEAD":1},"365d":{"bbtools":1048,"bbtools --HEAD":2}},"install_on_request":{"30d":{"bbtools":69,"bbtools --HEAD":1},"90d":{"bbtools":206,"bbtools --HEAD":1},"365d":{"bbtools":1048,"bbtools --HEAD":2}},"build_error":{"30d":{"bbtools":0}}},
"generated_date":"2026-06-07"}
