limma

Linear Models for Microarray Data

Data analysis, linear models and differential expression for microarray data.

Author	Gordon Smyth with contributions from Matthew Ritchie, Jeremy Silver, James Wettenhall, Natalie Thorne, Mette Langaas, Egil Ferkingstad, Marcus Davy, Francois Pepin, Dongseok Choi, Di Wu, Alicia Oshlack, Carolyn de Graaf, Yifang Hu and Wei Shi.
Maintainer	Gordon Smyth

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("limma")

biocViews	Microarray , OneChannel , TwoChannel , DataImport , QualityControl , Preprocessing , Bioinformatics , DifferentialExpression , MultipleComparisons , TimeCourse
Depends	R , methods
Imports
Suggests	affy , marray , MASS , org.Hs.eg.db , splines , sma , statmod , vsn
System Requirements
License	LGPL
URL	http://bioinf.wehi.edu.au/limma
Depends On Me	AffyExpress , affylmGUI , Agi4x44PreProcess , arrayQuality , ArrayTools , CALIB , codelink , convert , limmaGUI , maDB , maigesPack , marray , qpcrNorm , Ringo , RMAGEML , snapCGH , timecourse
Imports Me	affycoretools , ArrayExpress , arrayQualityMetrics , beadarray , betr , explorase , maSigPro , Ringo , RNAither , SSPA , vsn
Suggests Me	ABarray , beadarraySNP , BiocCaseStudies , Category , CMA , dyebias , GeneSelector , GEOquery , lumi , oligo , OLIN , plw , puma , rtracklayer
Development History	Bioconductor Changelog