adSplit

Annotation-Driven Clustering

This package implements clustering of microarray gene expression profiles according to functional annotations. For each term genes are annotated to, splits into two subclasses are computed and a significance of the supporting gene set is determined.

Author	Claudio Lottaz, Joern Toedling
Maintainer	Claudio Lottaz

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("adSplit")

Documentation

bcb_logo.pdf	PDF
minerva_bcb.pdf	PDF
Annotation-Driven Clustering	PDF	R Script
Reference Manual

Details

biocViews	Microarray , Bioinformatics , Clustering
Depends	R , methods , graphics , stats , cluster , multtest , Biobase , affy , GO.db , KEGG.db
Imports
Suggests	golubEsets , vsn , hu6800.db
System Requirements
License	GPL (>= 2)
URL	http://compdiag.molgen.mpg.de/software/index.shtml
Depends On Me
Imports Me
Suggests Me
Development History	Bioconductor Changelog

Package Downloads

Package source	adSplit_1.14.0.tar.gz
Windows binary	adSplit_1.14.0.zip
MacOS X 10.4 (Tiger) binary	adSplit_1.14.0.tgz
MacOS X 10.5 (Leopard) binary	adSplit_1.14.0.tgz
Package Downloads Report	Downloads Stats