aCGH

Classes and functions for Array Comparative Genomic Hybridization data.

Functions for reading aCGH data from image analysis output files and clone information files, creation of aCGH S3 objects for storing these data. Basic methods for accessing/replacing, subsetting, printing and plotting aCGH objects.

Author	Jane Fridlyand , Peter Dimitrov
Maintainer	Jane Fridlyand

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("aCGH")

Documentation

aCGH Overview	PDF	R Script
Reference Manual

Details

biocViews	DNACopyNumber , DataImport , Genetics
Depends	R , survival , multtest
Imports	Biobase , cluster , graphics , grDevices , methods , multtest , splines , stats , survival , utils
Suggests
System Requirements
License	GPL
URL
Depends On Me	snapCGH
Imports Me
Suggests Me	beadarraySNP
Development History	Bioconductor Changelog

Package Downloads

Package source	aCGH_1.18.1.tar.gz
Windows binary	aCGH_1.18.1.zip
MacOS X 10.4 (Tiger) binary	aCGH_1.18.1.tgz
MacOS X 10.5 (Leopard) binary	aCGH_1.18.1.tgz
Package Downloads Report	Downloads Stats