ACME

Algorithms for Calculating Microarray Enrichment (ACME)

ACME (Algorithms for Calculating Microarray Enrichment) is a set of tools for analysing tiling array ChIP/chip, DNAse hypersensitivity, or other experiments that result in regions of the genome showing "enrichment". It does not rely on a specific array technology (although the array should be a "tiling" array), is very general (can be applied in experiments resulting in regions of enrichment), and is very insensitive to array noise or normalization methods. It is also very fast and can be applied on whole-genome tiling array experiments quite easily with enough memory.

Author Sean Davis
Maintainer Sean Davis

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("ACME")

Documentation

ACME PDF R Script
Reference Manual

Details

biocViews
Depends
R , methods
Imports
Suggests
System Requirements
License GPL version 2 or newer
URL http://watson.nci.nih.gov/~sdavis
Depends On Me
Imports Me
Suggests Me
Development History Bioconductor Changelog

Package Downloads

Package source ACME_1.10.0.tar.gz
Windows binary ACME_1.10.0.zip
MacOS X 10.4 (Tiger) binary ACME_1.10.0.tgz
MacOS X 10.5 (Leopard) binary ACME_1.10.0.tgz
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