topGO

topGO: Enrichment analysis for Gene Ontology

topGO package provides tools for testing GO terms while accounting for the topology of the GO graph. Different test statistics and different methods for eliminating local similarities and dependencies between GO terms can be implemented and applied.

Author Adrian Alexa, Jorg Rahnenfuhrer
Maintainer Adrian Alexa

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("topGO")

Documentation

Package Downloads

doc
Reference Manual
Package source topGO_1.10.1.tar.gz
Windows binary topGO_1.10.1.zip
MacOS X 10.4 (Tiger) binary topGO_1.10.1.tgz
MacOS X 10.5 (Leopard) binary topGO_1.10.1.tgz
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Details

biocViews
Depends
R , methods , graph , Biobase , GO.db , AnnotationDbi , SparseM
Imports
methods , graph , Biobase , SparseM , AnnotationDbi
Suggests
System Requirements
License LGPL
URL
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Development History Bioconductor Changelog