stam

Structured Analysis of Microarray Data

The stam package performs a biologically structured classification of microarray profiles according to clinical phenotypes. GO terms are used to link classification results to biological aspects. We call biologically focused signatures corresponding to these class predictions molecular symptoms. Thus, stam allows for molecular stratification of patients with complex phenotypes according to presence/absence patterns of molecular symptoms.

Author Claudio Lottaz
Maintainer Claudio Lottaz

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("stam")

Documentation

Package Downloads

bcb_logo.pdf
minerva_bcb.pdf
server_scheme.pdf
Structured Analysis of Microarrays
Reference Manual
Package source stam_1.10.0.tar.gz
Windows binary stam_1.10.0.zip
MacOS X 10.4 (Tiger) binary stam_1.10.0.tgz
MacOS X 10.5 (Leopard) binary stam_1.10.0.tgz
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Details

biocViews
Depends
R , GO.db , Biobase , pamr , cluster , annaffy , methods , utils
Imports
Suggests
System Requirements
License GPL (>= 2)
URL http://compdiag.uni-regensburg.de/software/index.shtml
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Development History Bioconductor Changelog