sagenhaft

Collection of functions for reading and comparing SAGE libraries

This package implements several functions useful for analysis of SAGE (Serial Analysis of Gene Expressen) data, i.e. extraction of a SAGE library from sequence files, sequence error correction, library comparison.

Author Tim Beissbarth , with contributions from Gordon Smyth and Lavinia Hyde .
Maintainer Tim Beissbarth

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("sagenhaft")

Documentation

Package Downloads

SAGEnhaft
Reference Manual
Package source sagenhaft_1.12.0.tar.gz
Windows binary sagenhaft_1.12.0.zip
MacOS X 10.4 (Tiger) binary sagenhaft_1.12.0.tgz
MacOS X 10.5 (Leopard) binary sagenhaft_1.12.0.tgz
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Details

biocViews
Depends
R , SparseM
Imports
Suggests
System Requirements
License GPL version 2 or newer
URL http://tagcalling.mbgproject.org
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Development History Bioconductor Changelog