pcot2

Principal Coordinates and Hotelling's T-Square method

PCOT2 is a permutation-based method for investigating changes in the activity of multi-gene networks. It utilizes inter-gene correlation information to detect significant alterations in gene network activities. Currently it can be applied to two-sample comparisons.

Author Sarah Song, Mik Black
Maintainer Sarah Song

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("pcot2")

Documentation

Package Downloads

HowToUseGeneLocator.pdf
PCOT2 Vignette
Reference Manual
Package source pcot2_1.10.0.tar.gz
Windows binary pcot2_1.10.0.zip
MacOS X 10.4 (Tiger) binary pcot2_1.10.0.tgz
MacOS X 10.5 (Leopard) binary pcot2_1.10.0.tgz
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Details

biocViews
Depends
R , grDevices , Biobase , amap
Imports
Suggests
multtest , hu6800.db , KEGG.db , mvtnorm
System Requirements
License GPL version 2 or newer
URL
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Development History Bioconductor Changelog