affxparser

Affymetrix File Parsing SDK

Package for parsing Affymetrix files (CDF, CEL, CHP, BPMAP, BAR). It provides methods for fast and memory efficient parsing of Affymetrix files using the Affymetrix' Fusion SDK. Both ASCII- and binary-based files are supported. Currently, there are methods for reading chip definition file (CDF) and a cell intensity file (CEL). These files can be read either in full or in part. For example, probe signals from a few probesets can be extracted very quickly from a set of CEL files into a convenient list structure.

Author Henrik Bengtsson, James Bullard, Kasper Daniel Hansen
Maintainer Kasper Daniel Hansen

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("affxparser")

Documentation

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Reference Manual
Package source affxparser_1.14.2.tar.gz
Windows binary affxparser_1.14.2.zip
MacOS X 10.4 (Tiger) binary affxparser_1.14.2.tgz
MacOS X 10.5 (Leopard) binary affxparser_1.14.2.tgz
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Details

biocViews
Depends
R
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License LGPL-2
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Development History Bioconductor Changelog