MergeMaid

Merge Maid

The functions in this R extension are intended for cross-study comparison of gene expression array data. Required from the user is gene expression matrices, their corresponding gene-id vectors and other useful information, and they could be 'list','matrix', or 'ExpressionSet'. The main function is 'mergeExprs' which transforms the input objects into data in the merged format, such that common genes in different datasets can be easily found. And the function 'intcor' calculate the correlation coefficients. Other functions use the output from 'modelOutcome' to graphically display the results and cross-validate associations of gene expression data with survival.

Author Xiaogang Zhong Leslie Cope Elizabeth Garrett Giovanni Parmigiani
Maintainer Xiaogang Zhong

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("MergeMaid")

Documentation

Package Downloads

MergeMaid primer
Reference Manual
Package source MergeMaid_2.14.0.tar.gz
Windows binary MergeMaid_2.14.0.zip
MacOS X 10.4 (Tiger) binary MergeMaid_2.14.0.tgz
MacOS X 10.5 (Leopard) binary MergeMaid_2.14.0.tgz
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Details

biocViews
Depends
R , survival , Biobase , MASS , methods
Imports
Suggests
System Requirements
License GPL version 2 or higher
URL http://astor.som.jhmi.edu/MergeMaid
Depends On Me
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XDE
Development History Bioconductor Changelog