GEOquery

Get data from NCBI Gene Expression Omnibus (GEO)

The NCBI Gene Expression Omnibus (GEO) is a public repository of microarray data (>200,000 experiments). Given the rich and varied nature of these data, it is only natural to want to apply BioConductor tools to these data. GEOquery is the bridge between GEO and BioConductor.

Author Sean Davis
Maintainer Sean Davis

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("GEOquery")

Documentation

Package Downloads
GEOquery
Reference Manual
Package source GEOquery_2.6.0.tar.gz
Windows binary GEOquery_2.6.0.zip
MacOS X 10.4 (Tiger) binary GEOquery_2.6.0.tgz
MacOS X 10.5 (Leopard) binary GEOquery_2.6.0.tgz
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Details

biocViews
Microarray , DataImport , OneChannel , TwoChannel , SAGE
Depends
methods , Biobase , RCurl
Imports
Suggests
limma
System Requirements
License GPL version 2
URL
Depends On Me
GEOmetadb
Imports Me
Suggests Me
PGSEA
Development History Bioconductor Changelog