Apoptosis and MAP-Kinase example datapackage:facsDoritR Documentation

_F_A_C_S _d_a_t_a _f_o_r _c_e_l_l-_b_a_s_e_d _a_p_o_p_t_o_s_i_s _a_s_s_a_y

_D_e_s_c_r_i_p_t_i_o_n:

     Set of FCS 3.0 files containing FACS data for each well of a 96
     well microtitre plate

_F_o_r_m_a_t:

     'map' and 'apoptosis' are directories, each containing 96 FCS 3.0
     files derived from a FACS experiment to characterize effectors of
     the MAP-Kinase and apoptotic pathways, respectively. The files may
     be imported using function 'readFCS' (for single files) or
     function 'readCytoSet' (for all files in the directory).

_S_o_u_r_c_e:

     Mamatha Sauermann (apoptosis), Meher Majety (MAP-Kinase), both at
     DKFZ Heidelberg

_R_e_f_e_r_e_n_c_e_s:

_S_e_e _A_l_s_o:

     'readFCS', 'readCytoSet'

_E_x_a_m_p_l_e_s:

     apo <- readFCS(system.file("extdata", "apoptosis",
                "test2933T3.A01", package="facsDorit"))
     apo
     exprs(apo[1:3,])
     description(apo)[3:6]

     map <- readFCS(system.file("extdata", "map",
                "060304MAPK controls.A01", package="facsDorit"))
     map
     exprs(map[1:3,])
     description(map)[3:6]

