stam

Structured Analysis of Microarray Data

The stam package performs a biologically structured classification of microarray profiles according to clinical phenotypes. GO terms are used to link classification results to biological aspects. We call biologically focused signatures corresponding to these class predictions molecular symptoms. Thus, stam allows for molecular stratification of patients with complex phenotypes according to presence/absence patterns of molecular symptoms.

Author Claudio Lottaz
Maintainer Claudio Lottaz

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("stam")

Documentation

bcb_logo.pdf PDF
minerva_bcb.pdf PDF
server_scheme.pdf PDF
Structured Analysis of Microarrays PDF R Script
Reference Manual

Details

biocViews
Depends
R , GO.db , Biobase , pamr , cluster , annaffy , methods , utils
Imports
Biobase , methods , pamr , cluster
Suggests
System Requirements
License GPL (>= 2)
URL http://compdiag.uni-regensburg.de/software/index.shtml
Depends On Me
Imports Me
Suggests Me
Development History Bioconductor Changelog

Package Downloads

Package source stam_1.12.0.tar.gz
Windows binary stam_1.12.0.zip
MacOS X 10.4 (Tiger) binary stam_1.12.0.tgz
MacOS X 10.5 (Leopard) binary stam_1.12.0.tgz
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