genefilter

genefilter: methods for filtering genes from microarray experiments

Some basic functions for filtering genes

Author R. Gentleman, V. Carey, W. Huber, F. Hahne
Maintainer Biocore Team c/o BioC user list

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("genefilter")

Documentation

HowTo: Genefilter PDF R Script
HowTo: Genefinder PDF R Script
Reference Manual

Details

biocViews
Bioinformatics , Microarray
Depends
Imports
AnnotationDbi , annotate , Biobase , graphics , methods , stats , survival
Suggests
Biobase , class , hgu95av2.db , methods , tkWidgets
System Requirements
License Artistic-2.0
URL
Depends On Me
affyQCReport , Agi4x44PreProcess , cellHTS , cellHTS2 , codelink , exonmap , GeneMeta , MLInterfaces , simpleaffy
Imports Me
affycoretools , arrayQualityMetrics , Category , crlmm , factDesign , Ringo , simpleaffy , tilingArray , XDE
Suggests Me
AffyExpress , annotate , ArrayTools , BiocCaseStudies , Category , clusterStab , GOstats , GSEAlm , logicFS , lumi , MCRestimate , oligo , oneChannelGUI , qpgraph , rtracklayer , siggenes , topGO , VanillaICE , XDE
Development History Bioconductor Changelog

Package Downloads

Package source genefilter_1.24.3.tar.gz
Windows binary genefilter_1.24.3.zip
MacOS X 10.4 (Tiger) binary genefilter_1.24.3.tgz
MacOS X 10.5 (Leopard) binary genefilter_1.24.3.tgz
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