KEGGgraph

KEGGgraph: A graph approach to KEGG PATHWAY in R and Bioconductor

KEGGGraph is an interface between KEGG pathway and graph object as well as a collection of tools to analyze, dissect and visualize these graphs. It parses the regularly updated KGML (KEGG XML) files into graph models maintaining all essential pathway attributes. The package offers functionalities including parsing, graph operation, visualization and etc.

Author	Jitao David Zhang and Stefan Wiemann
Maintainer	Jitao David Zhang

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("KEGGgraph")

Documentation

KEGGgraph: graph approach to KEGG PATHWAY	PDF	R Script
KEGGgraph: Application Examples	PDF	R Script
Reference Manual

Details

biocViews	Pathways , GraphsAndNetworks
Depends	methods , XML , graph
Imports
Suggests	RBGL , Rgraphviz , KEGG.db , org.Hs.eg.db , hgu133plus2.db , SPIA
System Requirements
License	GPL (>=2)
URL	http://www.dkfz.de/en/mga/index.html
Depends On Me
Imports Me
Suggests Me	SPIA
Development History	Bioconductor Changelog

Package Downloads

Package source	KEGGgraph_1.1.0.tar.gz
Windows binary	KEGGgraph_1.1.0.zip
MacOS X 10.4 (Tiger) binary	KEGGgraph_1.1.0.tgz
MacOS X 10.5 (Leopard) binary	KEGGgraph_1.1.0.tgz
Package Downloads Report	Downloads Stats