GeneSelector

GeneSelector

The term 'GeneSelector' refers to a filter selecting those genes which are consistently identified as differentially expressed using various statistical procedures. 'Selected' genes are those present at the top of the list in various featured ranking methods (currently 15). In addition, the stability of the findings can be taken in account in the final ranking by examining perturbed versions of the original data set, e.g. by leaving samples, swapping class labels, generating bootstrap replicates or adding noise.

Author Martin Slawski , Anne-Laure Boulesteix .
Maintainer Martin Slawski

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("GeneSelector")

Documentation

GeneSelector Manual PDF R Script
Reference Manual

Details

biocViews
Depends
R , methods , stats , Biobase
Imports
Suggests
multtest , siggenes , samr , limma , sma
System Requirements
License GPL (version 2 or later)
URL
Depends On Me
Imports Me
Suggests Me
Development History Bioconductor Changelog

Package Downloads

Package source GeneSelector_1.4.0.tar.gz
Windows binary GeneSelector_1.4.0.zip
MacOS X 10.4 (Tiger) binary GeneSelector_1.4.0.tgz
MacOS X 10.5 (Leopard) binary GeneSelector_1.4.0.tgz
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