CGHcall

Calling aberrations for array CGH tumor profiles.

Calls aberrations for array CGH data using a six state mixture model as well as several biological concepts that are ignored by existing algorithms. Visualization of profiles is also provided.

Author	Sjoerd Vosse and Mark van de Wiel
Maintainer	Sjoerd Vosse

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("CGHcall")

Documentation

CGHcall	PDF	R Script
Reference Manual

Details

biocViews	Microarray , DNACopyNumber , Preprocessing , Visualization
Depends	R , CGHbase , impute , DNAcopy
Imports
Suggests
System Requirements
License	GPL (http://www.gnu.org/copyleft/gpl.html)
URL
Depends On Me
Imports Me
Suggests Me
Development History	Bioconductor Changelog

Package Downloads

Package source	CGHcall_2.2.0.tar.gz
Windows binary	CGHcall_2.2.0.zip
MacOS X 10.4 (Tiger) binary	CGHcall_2.2.0.tgz
MacOS X 10.5 (Leopard) binary	CGHcall_2.2.0.tgz
Package Downloads Report	Downloads Stats