limma

Linear Models for Microarray Data

Data analysis, linear models and differential expression for microarray data.

Author Gordon Smyth with contributions from Matthew Ritchie, Jeremy Silver, James Wettenhall, Natalie Thorne, Mette Langaas, Egil Ferkingstad, Marcus Davy, Francois Pepin, Dongseok Choi, Di Wu, Alicia Oshlack and Carolyn de Graaf.
Maintainer Gordon Smyth

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("limma")

Documentation

Package Downloads
limma.pdf
usersguide.pdf
Reference Manual
Package source limma_2.16.5.tar.gz
Windows binary limma_2.16.5.zip
MacOS X 10.4 (Tiger) binary limma_2.16.5.tgz
MacOS X 10.5 (Leopard) binary limma_2.16.5.tgz
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Details

biocViews
Microarray , OneChannel , TwoChannel , DataImport , QualityControl , Preprocessing , Bioinformatics , DifferentialExpression , MultipleComparisons , TimeCourse
Depends
R , methods
Imports
Suggests
affy , marray , MASS , org.Hs.eg.db , splines , sma , statmod , vsn
System Requirements
License LGPL
URL http://bioinf.wehi.edu.au/limma
Depends On Me
AffyExpress , Agi4x44PreProcess , ArrayExpress , ArrayTools , CALIB , RMAGEML , Ringo , affycoretools , affylmGUI , arrayQuality , beadarray , codelink , convert , limmaGUI , maDB , maigesPack , marray , snapCGH , timecourse , vsn
Imports Me
RNAither , explorase
Suggests Me
ABarray , BiocCaseStudies , CMA , Category , GEOquery , GeneSelector , OLIN , beadarraySNP , lumi , maSigPro , plw , puma , rtracklayer
Development History Bioconductor Changelog