arrayQualityMetrics

Quality metrics on microarray data sets

This package performs quality metrics on expressionSet, NChannelSet or affyBatch objects containing microarray data, one or two channels. The results are designated to allow the user to rapidly assess the quality of a set of arrays.

Author	Audrey Kauffmann, Wolfgang Huber
Maintainer	Audrey Kauffmann

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("arrayQualityMetrics")

Documentation

Package Downloads

arrayQualityMetrics.pdf

Reference Manual

Package source	arrayQualityMetrics_1.8.1.tar.gz
Windows binary	arrayQualityMetrics_1.8.1.zip
MacOS X 10.4 (Tiger) binary	arrayQualityMetrics_1.8.1.tgz
MacOS X 10.5 (Leopard) binary	arrayQualityMetrics_1.8.1.tgz
Package Downloads Report	Downloads Stats

Details

biocViews	Microarray , QualityControl , OneChannel , TwoChannel , ReportWriting
Depends	R , Biobase , geneplotter , genefilter , vsn , RColorBrewer , affyPLM , simpleaffy , lattice , latticeExtra , grid , beadarray , methods , marray
Imports
Suggests	CCl4 , ALLMLL
System Requirements
License	LGPL version 2 or newer
URL
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Development History	Bioconductor Changelog