ChemmineR

A Compound Data Mining Framework

ChemMineR is an open source compound mining framework. It contains functions for atom descriptor calculation, structure similarity searching, clustering of compound libraries and various utilities for managing complex compound data. It also offers a wide range of visualization functions for compound clusters and chemical structures. The package is integrated with the online ChemMine environment and allows bidirectional communications between the two services.

Author Y. Eddie Cao, Anna Charisi, Li-Chang Cheng
Maintainer Y. Eddie Cao

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("ChemmineR")

Documentation

Package Downloads

gpls Tutorial
overview.pdf
scatterplot.pdf
searchscreenshot.pdf
visualizescreenshot.pdf
Reference Manual
Package source ChemmineR_1.2.0.tar.gz
Windows binary ChemmineR_1.2.0.zip
MacOS X 10.4 (Tiger) binary ChemmineR_1.2.0.tgz
MacOS X 10.5 (Leopard) binary ChemmineR_1.2.0.tgz
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Details

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License GPL (>=2)
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Development History Bioconductor Changelog