| Package | Maintainer | Title |
|---|---|---|
| annaffy | Colin A. Smith | Annotation tools for Affymetrix biological metadata |
| annotate | Biocore Team c/o BioC user list | Annotation for microarrays |
| Category | Robert Gentleman | Category Analysis |
| domainsignatures | Florian Hahne | Geneset enrichment based on InterPro domain signatures |
| GlobalAncova | R. Meister | Calculates a global test for differential gene expression between groups |
| globaltest | Jelle Goeman | Testing Association of Groups of Genes with a Clinical Variable |
| KEGGSOAP | Robert Gentleman | Client-side SOAP access KEGG |
| miRNApath | James M. Ward | miRNApath: Pathway Enrichment for miRNA Expression Data |
| nem | Florian Markowetz | Nested Effects Models to reconstruct phenotypic hierarchies |
| occugene | Oliver Will | Functions for Multinomial Occupancy Distribution |