stam

Structured Analysis of Microarray Data

The stam package performs a biologically structured classification of microarray profiles according to clinical phenotypes. GO terms are used to link classification results to biological aspects. We call biologically focused signatures corresponding to these class predictions molecular symptoms. Thus, stam allows for molecular stratification of patients with complex phenotypes according to presence/absence patterns of molecular symptoms.

Author Claudio Lottaz
Maintainer Claudio Lottaz

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("stam")

Vignettes (Documentation)

Package Downloads

bcb_logo.pdf
minerva_bcb.pdf
server_scheme.pdf
tr_2004_03.pdf
Source stam_1.8.0.tar.gz
Windows binary stam_1.8.0.zip
OS X binary stam_1.8.0.tgz

Details

biocViews
Depends R, GO.db, Biobase, pamr, cluster, annaffy, methods, utils
Suggests golubEsets, hu6800.db
Imports
SystemRequirements
License GPL (>= 2)
URL http://compdiag.uni-regensburg.de/software/index.shtml
dependsOnMe
suggestsMe