spikeLI

Affymetrix Spike-in Langmuir Isotherm Data Analysis Tool

SpikeLI is a package that performs the analysis of the Affymetrix spike-in data using the Langmuir Isotherm. The aim of this package is to show the advantages of a physical-chemistry based analysis of the Affymetrix microarray data compared to the traditional methods. The spike-in (or Latin square) data for the HGU95 and HGU133 chipsets have been downloaded from the Affymetrix web site. The model used in the spikeLI package is described in details in E. Carlon and T. Heim, Physica A 362, 433 (2006).

Author Delphine Baillon, Paul Leclercq , Sarah Ternisien, Thomas Heim, Enrico Carlon
Maintainer Enrico Carlon

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("spikeLI")

Vignettes (Documentation)

Package Downloads

IvsDG_TagE.pdf
Ivsc.pdf
collapse_A14.pdf
langmuir2.pdf
spikeLI.pdf
Source spikeLI_1.8.0.tar.gz
Windows binary spikeLI_1.8.0.zip
OS X binary spikeLI_1.8.0.tgz

Details

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License GPL
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