simpleaffy

Very simple high level analysis of Affymetrix data

Provides high level functions for reading Affy .CEL files, phenotypic data, and then computing simple things with it, such as t-tests, fold changes and the like. Makes heavy use of the affy library. Also has some basic scatter plot functions and mechanisms for generating high resolution journal figures...

Author Crispin J Miller
Maintainer Crispin Miller

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("simpleaffy")

Vignettes (Documentation)

Package Downloads

QCandSimpleaffy.pdf
simpleAffy.pdf
Source simpleaffy_2.16.1.tar.gz
Windows binary simpleaffy_2.16.1.zip
OS X binary simpleaffy_2.16.1.tgz

Details

biocViews
Depends R, affy, genefilter, Biobase, methods, utils, gcrma
Suggests
Imports methods, utils
SystemRequirements
License GPL version 2 or later
URL http://www.bioconductor.org, http://bioinformatics.picr.man.ac.uk/simpleaffy/
dependsOnMe affyQCReport, arrayQualityMetrics, exonmap, yaqcaffy
suggestsMe AffyExpress