sigPathway

Pathway Analysis

Conducts pathway analysis by calculating the NT_k and NE_k statistics as described in Tian et al. (2005)

Author Weil Lai (optimized R and C code), Lu Tian and Peter Park (algorithm development and initial R code)
Maintainer Weil Lai

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("sigPathway")

Vignettes (Documentation)

Package Downloads

sigPathway-vignette.pdf
Source sigPathway_1.8.0.tar.gz
Windows binary sigPathway_1.8.0.zip
OS X binary sigPathway_1.8.0.tgz

Details

biocViews
Depends R
Suggests hgu133a, XML
Imports
SystemRequirements
License GPL 2
URL http://www.pnas.org/cgi/doi/10.1073/pnas.0506577102, http://www.chip.org/~ppark/Supplements/PNAS05.html
dependsOnMe
suggestsMe