panp

Presence-Absence Calls from Negative Strand Matching Probesets

A function to make gene presence/absence calls based on distance from negative strand matching probesets (NSMP) which are derived from Affymetrix annotation. PANP is applied after gene expression values are created, and therefore can be used after any preprocessing method such as MAS5 or GCRMA, or PM-only methods like RMA. NSMP sets have been established for the HGU133A and HGU133-Plus-2.0 chipsets to date.

Author Peter Warren
Maintainer Peter Warren

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("panp")

Vignettes (Documentation)

Package Downloads

panp.pdf
Source panp_1.10.0.tar.gz
Windows binary panp_1.10.0.zip
OS X binary panp_1.10.0.tgz

Details

biocViews
Depends affy, R, Biobase
Suggests
Imports
SystemRequirements
License GPL version 2 or newer
URL
dependsOnMe
suggestsMe