beadarray

Quality assessment and low-level analysis for Illumina BeadArray data

The package is able to read bead-level data (raw TIFFs and text files) output by BeadScan as well as bead-summary data from BeadStudio. Methods for quality assessment and low-level analysis are provided.

Author Mark Dunning, Mike Smith, Isabelle Camilier, Matt Ritchie
Maintainer Mark Dunning

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("beadarray")

Vignettes (Documentation)

Package Downloads

beadarray.pdf
beadlevel.pdf
beadsummary.pdf
Source beadarray_1.8.0.tar.gz
Windows binary beadarray_1.8.0.zip
OS X binary beadarray_1.8.0.tgz

Details

biocViews
Depends limma, Biobase, methods, geneplotter, affy
Suggests beadarraySNP, lumi, vsn
Imports
SystemRequirements
License GPL
URL
dependsOnMe arrayQualityMetrics
suggestsMe beadarraySNP, lumi