affyPLM

Methods for fitting probe-level models

A package that extends and improves the functionality of the base affy package. Routines that make heavy use of compiled code for speed. Central focus is on implementation of methods for fitting probe-level models and tools using these models. PLM based quality assessment tools.

Author Ben Bolstad
Maintainer Ben Bolstad

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("affyPLM")

Vignettes (Documentation)

Package Downloads

AffyExtensions.pdf
MAplots.pdf
QualityAssess.pdf
ThreeStep.pdf
Source affyPLM_1.16.0.tar.gz
Windows binary affyPLM_1.16.0.zip
OS X binary affyPLM_1.16.0.tgz

Details

biocViews
Depends R, affy, Biobase, methods, gcrma, stats, preprocessCore
Suggests affydata
Imports
SystemRequirements
License GPL version 2 or newer
URL http://bmbolstad.com
dependsOnMe RefPlus, affyQCReport, arrayQualityMetrics
suggestsMe AffyExpress, BiocCaseStudies, affylmGUI, oneChannelGUI