SNPchip

Classes and Methods for high throughput SNP chip data

This package defines classes and functions for plotting copy number and genotype in high throughput SNP platforms such as Affymetrix and Illumina. In particular, SNPchip is a useful add-on to the oligo package for visualizing SNP-level estimates after pre-processing.

Author Robert Scharpf and Ingo Ruczinski
Maintainer Robert Scharpf

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("SNPchip")

Vignettes (Documentation)

Package Downloads

SNPchip.pdf
oligoHowTo.pdf
Source SNPchip_1.4.0.tar.gz
Windows binary SNPchip_1.4.0.zip
OS X binary SNPchip_1.4.0.tgz

Details

biocViews
Depends R, Biobase, methods, oligoClasses
Suggests RSQLite, geneplotter, stats, graphics, VanillaICE, RColorBrewer
Imports
SystemRequirements
License LGPL version 2 or newer
URL http://www.biostat.jhsph.edu/~iruczins/software/snpchip.html
dependsOnMe VanillaICE
suggestsMe