GEOquery

Get data from NCBI Gene Expression Omnibus (GEO)

The NCBI Gene Expression Omnibus (GEO) is a public repository of microarray data (>200,000 experiments). Given the rich and varied nature of these data, it is only natural to want to apply BioConductor tools to these data. GEOquery is the bridge between GEO and BioConductor.

Author Sean Davis
Maintainer Sean Davis

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("GEOquery")

Vignettes (Documentation)

Package Downloads

GEOquery.pdf
Source GEOquery_2.4.5.tar.gz
Windows binary GEOquery_2.4.1.zip
OS X binary GEOquery_2.4.5.tgz

Details

biocViews
Depends methods, Biobase, RCurl
Suggests limma
Imports
SystemRequirements
License GPL version 2
URL
dependsOnMe GEOmetadb
suggestsMe PGSEA