Biobase

Biobase: Base functions for Bioconductor

Functions that are needed by many other packages or which replace R functions.

Author R. Gentleman, V. Carey, M. Morgan, S. Falcon
Maintainer Biocore Team c/o BioC user list

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("Biobase")

Vignettes (Documentation)

Package Downloads

BiobaseDevelopment.pdf
Bioconductor.pdf
ExpressionSetIntroduction.pdf
HowTo.pdf
Qviews.pdf
esApply.pdf
Source Biobase_2.0.1.tar.gz
Windows binary Biobase_2.0.1.zip
OS X binary Biobase_2.0.1.tgz

Details

biocViews
Depends R, tools, methods, utils
Suggests tkWidgets, ALL
Imports
SystemRequirements
License Artistic-2.0
URL
dependsOnMe ABarray, AnnBuilder, AnnotationDbi, BSgenome, BioMVCClass, BiocCaseStudies, CGHcall, Category, EBarrays, GEOquery, GGBase, GGtools, GOstats, GSEABase, GSEAlm, GeneMeta, GeneSelector, GeneSpring, GeneTraffic, HEM, LMGene, MLInterfaces, MergeMaid, Mfuzz, MiPP, OLIN, OrderedList, OutlierD, PGSEA, RMAGEML, RbcBook1, RefPlus, Resourcerer, Ringo, Rintact, Rtreemix, SNPchip, VanillaICE, XDE, adSplit, affyPLM, affyQCReport, affy, affycomp, affycoretools, affylmGUI, altcdfenvs, annaffy, annotate, annotationTools, arrayQualityMetrics, beadarraySNP, beadarray, bgx, bioDist, biocGraph, cellHTS2, cellHTS, clusterStab, codelink, convert, copa, ecolitk, edd, factDesign, flowCore, flowUtils, gaga, gcrma, geneRecommender, genefilter, geneplotter, goProfiles, goTools, hopach, idiogram, lapmix, maDB, maSigPro, macat, makecdfenv, matchprobes, multtest, oligoClasses, oligo, oneChannelGUI, ontoTools, panp, pcot2, pdInfoBuilder, pdmclass, plgem, ppiStats, prada, puma, rHVDM, rbsurv, reb, rtracklayer, safe, siggenes, simpleaffy, splicegear, stam, tilingArray, timecourse, topGO, twilight, vsn, webbioc
suggestsMe BiocCaseStudies, GlobalAncova, ROC, hexbin, lumi, nem, pkgDepTools, tkWidgets, vbmp, widgetTools