affycoretools

Functions useful for those doing repetitive analyses with Affymetrix GeneChips.

Various wrapper functions that have been written to streamline the more common analyses that a core Biostatistician might see.

Author James W. MacDonald
Maintainer James W. MacDonald

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("affycoretools")

Vignettes (Documentation)

Package Downloads
affycoretools.pdf
affycoretools_biomaRt.pdf
Source affycoretools_1.10.2.tar.gz
Windows binary affycoretools_1.10.2.zip
OS X binary affycoretools_1.10.2.tgz

Details

biocViews
ReportWriting , Microarray , OneChannel , Preprocessing
Depends affy, limma, GOstats, biomaRt, gcrma, Biobase, annotate, xtable, annaffy
Suggests hgfocus, hgfocuscdf
Imports
SystemRequirements
License Artistic
URL
dependsOnMe
suggestsMe