affxparser

Affymetrix File Parsing SDK

Package for parsing Affymetrix files (CDF, CEL, CHP, BPMAP, BAR). It provides methods for fast and memory efficient parsing of Affymetrix files using the Affymetrix' Fusion SDK. Both ASCII- and binary-based files are supported. Currently, there are methods for reading chip definition file (CDF) and a cell intensity file (CEL). These files can be read either in full or in part. For example, probe signals from a few probesets can be extracted very quickly from a set of CEL files into a convenient list structure.

Author	Henrik Bengtsson, James Bullard, Kasper Daniel Hansen
Maintainer	Kasper Daniel Hansen

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("affxparser")

Vignettes (Documentation)

Package Downloads

No vignettes available

Source	affxparser_1.10.2.tar.gz
Windows binary	affxparser_1.10.2.zip
OS X binary	affxparser_1.10.2.tgz

Details

biocViews	Infrastructure , DataImport
Depends	R
Suggests	R.utils, AffymetrixDataTestFiles
Imports
SystemRequirements
License	LGPL-2
URL
dependsOnMe	oligo, pdInfoBuilder
suggestsMe