Biobase

Biobase: Base functions for Bioconductor

Functions that are needed by many other packages or which replace R functions.

Author R. Gentleman, V. Carey, M. Morgan, S. Falcon
Maintainer Biocore Team c/o BioC user list

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("Biobase")

Vignettes (Documentation)

Package Downloads

BiobaseDevelopment.pdf
Bioconductor.pdf
ExpressionSetIntroduction.pdf
HowTo.pdf
Qviews.pdf
esApply.pdf
Source Biobase_1.16.3.tar.gz
Windows binary Biobase_1.16.3.zip
OS X binary Biobase_1.16.3.tgz

Details

biocViews
Depends R, tools, methods, utils
Suggests tkWidgets, ALL
Imports
SystemRequirements
License The Artistic License, Version 2.0
URL
dependsOnMe ABarray, AnnBuilder, AnnotationDbi, BSgenome, BioMVCClass, Category, EBarrays, GEOquery, GGtools, GOstats, GSEABase, GeneMeta, GeneSpring, GeneTraffic, HEM, LMGene, MCRestimate, MLInterfaces, MergeMaid, Mfuzz, MiPP, OLIN, OrderedList, OutlierD, PGSEA, RMAGEML, RbcBook1, RefPlus, Resourcerer, Ringo, SAGElyzer, SNPchip, adSplit, affyPLM, affyQCReport, affy, affycomp, affycoretools, affylmGUI, altcdfenvs, annaffy, annotate, annotationTools, arrayMagic, arrayQualityMetrics, beadarraySNP, beadarray, bgx, bioDist, biocGraph, cellHTS2, cellHTS, clusterStab, codelink, convert, copa, ecolitk, edd, factDesign, flowCore, flowUtils, flowViz, gcrma, geneRecommender, genefilter, geneplotter, goTools, hopach, iSNetwork, idiogram, lumi, maDB, maSigPro, macat, makecdfenv, matchprobes, multtest, oligoClasses, oligo, oneChannelGUI, ontoTools, panp, pcot2, pdInfoBuilder, pdmclass, plgem, prada, puma, rHVDM, rbsurv, reb, safe, siggenes, simpleaffy, splicegear, tilingArray, timecourse, topGO, twilight, vsn, webbioc
suggestsMe GlobalAncova, ROC, hexbin, nem, pkgDepTools, ppiStats, tkWidgets, vbmp, widgetTools